align_config_scoring_scheme.hpp

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// -----------------------------------------------------------------------------------------------------
// Copyright (c) 2006-2020, Knut Reinert & Freie Universität Berlin
// Copyright (c) 2016-2020, Knut Reinert & MPI für molekulare Genetik
// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
// -----------------------------------------------------------------------------------------------------
 
#pragma once
 
#include <seqan3/std/concepts>
 
#include <seqan3/alignment/configuration/detail.hpp>
#include <seqan3/alignment/scoring/scoring_scheme_concept.hpp>
#include <seqan3/core/algorithm/pipeable_config_element.hpp>
#include <seqan3/utility/type_traits/basic.hpp>
 
namespace seqan3::align_cfg
{
 
template <std::semiregular scoring_scheme_t>
struct scoring_scheme : public pipeable_config_element<scoring_scheme<scoring_scheme_t>>
{
    scoring_scheme_t scheme{};
 
    constexpr scoring_scheme() = default; 
    constexpr scoring_scheme(scoring_scheme const &) = default; 
    constexpr scoring_scheme(scoring_scheme &&) = default; 
    constexpr scoring_scheme & operator=(scoring_scheme const &) = default; 
    constexpr scoring_scheme & operator=(scoring_scheme &&) = default; 
    ~scoring_scheme() = default; 
 
    explicit constexpr scoring_scheme(scoring_scheme_t scheme) : scheme{std::move(scheme)}
    {}
 
    static constexpr seqan3::detail::align_config_id id{seqan3::detail::align_config_id::scoring};
};
 
template <typename scheme_t>
scoring_scheme(scheme_t) -> scoring_scheme<std::remove_cvref_t<scheme_t>>;
 
} // namespace seqan3::align_cfg